ACCESS Resource Provider Software Discovery

gurobi v9.5.0

Module: gurobi/9.5.0

The fastest and most powerful mathematical programming solver available for LP, QP and MIP (MILP, MIQP, and MIQCP) problems.

Domain: libraries

LAMMPS v 14Dec21

Module: LAMMPS/ 14Dec21

Classical molecular dynamics.

Domain: Materials Sciences

Keywords: molecular dynamics

ncdu v 2.5

Module: ncdu/ 2.5

Ncdu is a disk usage analyzer with an ncurses interface.

Domain: Other

ucx v1.11.2

Module: ucx/1.11.2

a communication library implementing high-performance messaging for MPI/PGAS frameworks

Domain: Libraries

intel-ipp-intel64 v2021.9.0

Module: intel-ipp-intel64/2021.9.0

ncdu v 1.15.1

Module: ncdu/ 1.15.1

Ncdu is a disk usage analyzer with an ncurses interface.

Domain: Other

canu v 1.5

Module: canu/ 1.5

A single molecule sequence assembler for genomes large and small.

Domain: Utilities

Keywords: singularity bioinformatics

comsol v6.2

Module: comsol/6.2

The comsol/6.2 modulefile defines the default system paths and environment variables needed to use the contents of the comsol/6.2 package.

Domain: Finite elements

gromacs v2018

Module: gromacs/2018

Gromacs 2018 for CPUs (RM version), compiled without CUDA support GROMACS (GROningen MAchine for Chemical Simulations) is a molecular dynamics package primarily designed for simulations of proteins, lipids and nucleic acids.

Domain: Computational Chemistry

Keywords:

intel-vtune v2023.2.0

Module: intel-vtune/2023.2.0

intel v2021.3.0

Module: intel/2021.3.0

Intel Compilers. Includes the icc, icpc, and ifort compilers along with the mkl libraries but no Intel MPI.

Domain: compilers

Keywords: icc icpc ifort

filtlong v 0.2.1

Module: filtlong/ 0.2.1

Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.

Domain: Biological Sciences

Keywords: singularity bioinformatics

SPAdes v 3.14.1

Module: SPAdes/ 3.14.1

SPAdes – St. Petersburg genome assembler – is an assembly toolkit containing various assembly pipelines.

Domain: Biological Sciences

Keywords: singularity bioinformatics

guppy v 6.0.0

Module: guppy/ 6.0.0

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

Domain: Biological Sciences

Keywords: singularity bioinformatics

Visit v 3.1.4

Module: Visit/ 3.1.4

VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool.

Domain: Visualization

Keywords: visualization

guppy v 6.5.7

Module: guppy/ 6.5.7

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

Domain: Biological Sciences

Keywords: singularity bioinformatics

BLAST+ v 2.9.0

Module: BLAST+/ 2.9.0

BLAST (basic local alignment search tool) is an algorithm and program for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides of DNA and/or RNA sequences.

Domain: Biological Sciences

Keywords: singularity bioinformatics

rich-cli v 1.8.0

Module: rich-cli/ 1.8.0

rich-cli is a command line toolbox for fancy output in the terminal.

Domain: Utilities

Keywords: singularity utilities

intel-icc32 v2023.2.1

Module: intel-icc32/2023.2.1

intel-mkl v2020.4.304

Module: intel-mkl/2020.4.304

Intel Math Kernel Library.

Domain: libraries

Keywords: MKL Math Kernel Library

QuPath v 0.6.0

Module: QuPath/ 0.6.0

QuPath is open source software for bioimage analysis.

Domain: Bioinformatics

Keywords: singularity utilities

SRA Toolkit v 2.10.9

Module: SRA Toolkit/ 2.10.9

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Domain: Biological Sciences

aocc v2.3.0

Module: aocc/2.3.0

The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly o

Domain: compilers

Keywords: clang clang++ flang AMD

intel-compiler v2023.2.1

Module: intel-compiler/2023.2.1

samtools v 1.13.0

Module: samtools/ 1.13.0

samtools is a suite of programs for interacting with high-throughput sequencing data.

Domain: Biological Sciences

Keywords: singularity bioinformatics